MIQE – Minimum Information for Publication of Quantitative Real-Time PCR Experiments
Tape qPCR – Douglass Sci
Bioconductor – Freeware Microarray Statistical Software Site, and an open source and open development software project for the analysis and comprehension of genomic data.
DAVID Bioinformatics Resources – The Database for Annotation, Visualization and Integrated Discovery (DAVID) 2008 is the sixth version of our original web-accessible programs. DAVID now provides a comprehensive set of functional annotation tools for investigators.
MeV – Normalized and filtered expression files can be analyzed using TIGR Multiexperiment Viewer (MeV). MeV is a versatile microarray data analysis tool, incorporating sophisticated algorithms for clustering, visualization, classification, statistical analysis
RMAexpress – This program is a standalone GUI program for Windows (and Linux) to compute gene expression summary values for Affymetrix Genechip® data using the RMA and to carry out quality assessment using probe-level metrics.
Onto-tools – Onto-Express – A novel tool able to automatically translate a list of differentially regulated genes into functional profiles characterizing the impact of the condition studied. Other tools – Compare, Design, Translate, Miner & Pathway-Express.
microarrays.org – Joe DeRisi’s site.