Resources and Useful Links
- American Society for Mass Spectrometry (ASMS)
- ChartographMS: Web-based mass spectrometry data analysis tool.
- ChemSpider: Chemistry database.
- CIUSuite 2: Collision-induced unfolding software.
- ExPASy Proteomics Server: From the Swiss Institute of Bioinformatics.
- HDExaminer: Hydrogen/deuterium exchange data analysis.
- HDX Workbench: Hydrogen/deuterium exchange data analysis.
- Human Metabolome Database: Metabolite database that supports MS queries.
- Institute for Systems Biology
- Interactive Peptide Spectral Annotator: For tandem mass spectra.
- Ion Source: A good site for mass spec. tutorials.
- LIPID MAPS: Lipidomics resource.
- MASH Explorer: Top-down proteomics software.
- Mass Bank: Open-source mass spectral library for small molecules.
- Mass Spectrum Simulator: From Prot pi.
- MaxQuant: Proteomics software.
- Molecular formula from monoisotopic mass. From cheminfo.org.
- Mongo Oligo Mass Calculator: For oligonucleotide mass analysis.
- MSPolyCalc: For polymer mass analysis.
- MZmine: Mass spectrometry data analysis platform.
- National Center for Biotechnology Information (NCBI)
- NIST Chemistry Web Book: Chemistry database.
- Protein Prospector: Tools for mining sequence databases.
- Proteomics Resource Center from Rockefeller University
- ProteoWizard: Mass spectrometry and proteomics data analysis tools.
- UniDec: For deconvolution of mass and ion mobility spectra.
- Unimod: Protein post-translational modification database.
- XCMS Online: Metabolomics data processing platform.
- Yates Lab: Makers of very useful proteomic tools, Scripps Research Institute.