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Below is a list of publications that have utilized Cal-Cryo@QB3-Berkeley’s instruments.

Mass Spectrometry Tools

• ExPASy Proteomics Server: Proteomics server of the Swiss Institute of Bioinformatics
• HDX Workbench: Hydrogen/deuterium exchange data analysis
• Human Metabolome Database: Metabolite database supports MS queries
• mMass: Open source mass spectrometry tool
• Mongo Oligo Mass Calculator: Calculates oligonucleotide masses
• ProSight PTM: Peptide and protein fragment ion mass calculation
• ProteinProspector: Tools for mining sequence databases
• UNIMOD: Protein post-translational modification database
• XCMS Online: Cloud-based metabolomic data processing platform

Scientific Organizations

• American Society for Mass Spectrometry
• LIPID Metabolites And Pathways Strategy (LIPID MAPS)
• National Center for Biotechnology Information (NCBI)